wiki:research

Research

LIMBA projects

  • Formal linguistics for proteomics - modeling, analysis and hypotheses testing, 2016-2019
    • Wroclaw University of Technology, Department of Biomedical Engineering
    • team: W.Dyrka, B.Konopka, M.Marciniak, Z.Onderko, M.Pyzik, O.Unold (Faculty of Electronics)
    • collaborators: F.Coste (Inria Rennes), S.J.Saupe (IBGC CNRS Bordeaux)
    • funding: National Centre for Science (2015/17/D/ST6/04054, PI: W.Dyrka)
    • publications: Konopka et al. 2017
    • theses: M.Marciniak (BSc Eng. 2017), Z.Onderko (BSc Eng. 2017)

Other projects

  • Grammar inference for generative modeling of pathogen recognition, 2012-2015
    • Inria, Centre de Recherche Bordeaux Sud-Ouest
      Institut de Biochimie et Genetique Cellulaires, CNRS
    • team: A.Daskalov (IBGC), P.Durrens (scientific advisor, LaBRI CNRS), W.Dyrka (Inria), M.Lamacchia (IBGC), M.Paoletti (IBGC), S.J.Saupe (IBGC, group leader), D.J.Sherman (Inria, group leader)
    • funding: Agence Nationale de la Recherche (ANR-11-BSV3-0019, PI: M.Paoletti)
    • publications: Dyrka et al. 2014, Daskalov et al. 2015
  • Evaluation of contact map based channel structures using the 3-dimensional electrodiffusion model, 2011-2012
    • Wroclaw University of Technology, Institute of Biomedical Engineering and Instrumentation
    • team: W.Dyrka, B.Konopka, M.Kotulska (group leader), M.Kurczyńska
    • funding: National Centre for Science (N N519 643540, PI: M.Kotulska)
    • publication: Dyrka et al. 2016
  • Structure prediction of a protein channel based on probabilistic formal grammars and the continuous ion flow model, 2007-2011
    • Wroclaw University of Technology, Institute of Biomedical Engineering and Instrumentation
    • thesis: W.Dyrka, PhD thesis (biocybernetics and biomedical engineering), advisor: dr hab. inż. M.Kotulska
    • funding: Ministry of Science and Higher Education (N N519 401537), Lower Silesian Voivodship (GRANT/II/37/2009), British Council Young Scientists Programme (WAR/342/108)
    • publications: Konopka et al. 2009, Dyrka & Nebel 2009, Kotulska et al. 2010, Dyrka et al. 2013a, Dyrka et al. 2013b
  • Probabilistic Context-Free Grammar for pattern detection in protein sequences, 2006-2007
    • Kingston University, Faculty of Computing, Information Systems and Mathematics
    • thesis: W.Dyrka, MSc by Research and Dissertation, director of study: dr Jean-Christophe Nebel
    • publication: Dyrka & Nebel 2009
  • Analysis of ion flow through nanopores in lipid membranes based on the Poisson-Nernst-Planck model, 2005-2006
    • Wroclaw University of Technology, Faculty of Fundamental Problems of Technology
    • thesis: W.Dyrka, MSc Eng. (biomedical engineering), supervisor: dr inż. M.Kotulska
    • publication: Dyrka et al. 2008
  • Protein pattern recognition using machine learning methods, 2004-2005
    • Wroclaw University of Technology, Faculty of Electronics
    • thesis: W.Dyrka, MSc Eng. (computer science) 2005, supervisor: dr inż. O.Unold
wiki/research.txt · Last modified: 2018/02/13 11:54 by wdyrka

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