wiki:software

Software

PCFG-CM - Probabilistic Context-Free Grammar framework using Contact Maps for modeling protein sequences

  • PCFG-CM at git.E-SCIENCE.PL
    A standalone C++ application for evolutionary learning of grammatical descriptors and for analyzing protein sequences
    (authors: Dyrka and Pyzik)

Quantiprot - quantitative analysis of protein sequences

  • Quantiprot at git.E-SCIENCE.PL (Konopka et al. BMC Bioinformatics 2017)
    A Python package, flexible and open for extension
    Installation: pip install quantiprot

SterSEG - tumor delineation in PET images (dev)

  • SterSEG at Github (Czakon et al. MICCAI 2016 - PETSEG challenge)
    A Python package with the command-line interface (developed at Stermedia Sp. z o.o.)

3d Poisson-Nernst-Planck calculations in pores (beta)

wiki/software.txt · Last modified: 2018/12/10 14:43 by wdyrka

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